YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1614
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.99
Transmembrane Helix	26	48	0.92
Cytoplasmic	49	57	0.81
Transmembrane Helix	58	78	0.94
Non-Cytoplasmic	79	120	0.95
Transmembrane Helix	121	140	0.93
Cytoplasmic	141	147	0.83
Transmembrane Helix	148	169	0.92
Non-Cytoplasmic	170	183	0.87
Transmembrane Helix	184	204	0.92
Cytoplasmic	205	217	0.88
Transmembrane Helix	218	237	0.91
Non-Cytoplasmic	238	248	0.78
Transmembrane Helix	249	270	0.91
Cytoplasmic	271	277	0.86
Transmembrane Helix	278	295	0.96
Non-Cytoplasmic	296	300	0.70
Transmembrane Helix	301	321	0.89
Cytoplasmic	322	339	0.82
Transmembrane Helix	340	361	0.91
Non-Cytoplasmic	362	380	0.93
Transmembrane Helix	381	404	0.93
Cytoplasmic	405	535	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEEVIQYI SRRKLFTENN EYNESYLLLF TIASSMIWIM IPGLAFLYSG LARRKSALSM  60
   61 IWIVIMSSFV GIFQWYFWGY SLAFSDTSKN SFIGDLHFFG FKNLLGASDD KTTYPDIAYS 120
  121 LFQLQFLLVT LAIIAGGCIA ERGRFLPALV FMFCWATVVY CPVVYWIWGG GWASSYRSGA 180
  181 LDYAGGGPVE ILSGMSAFVY SAFLGRRNET LMINYRPHNI STIFLGTSLL YVGWLFFNGF 240
  241 SCGNPSLKVA YSMMNTHLCG AFGAISWCLL DFRLENKWSM VAVCSGCISG LVAATPSSGM 300
  301 IPLWASVILG ITAGIVCNLS TKIKYLLHVD DSLDVWAEHG MAGVVGLIFN ALFGSATVIG 360
  361 YDGVTDHQGG WIDHNWKQLY IQIVYILATM AYSGVVTAIL CFVINKIPGL HLRIDYNGEE 420
  421 AGVDEDQIGE FAYDYVEVRR DFLDWGIPTV NPTYQNSIND HQQQQQPEVP EITSQQKRVG 480
  481 GGLSGIEETE EKQVQGIPIK RQTQIIDGTT TQSNSDTTSN TSIQEKHDPV EYRPS