YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8500, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCSIYHLNT GVISLLDYFN KTWVNQSTAI LPAYYITNCS VEDMLSYNNI TSDPKYLAFD  60
   61 YSPYNKRDNG DTYVALLFVL SGSCVSMWML SLLLYLSPKY KRKPLLTQLA TVFYAIITTF 120
  121 FLNKLTRASE KQYYEDVLDI VELHTILYNN VEYRVLIIIF QVLLLLSWFQ IIQKLAKQKY 180
  181 KRIIAIVTGV LMAAFSGCFI YYQVEYNTEG RIHMENISGL YLRWKVVRSV MKLILVLWFA 240
  241 GNLLYYTTVV KNPRKICYCK KLLPLAIFNW FLLILHIILG ILHISLFEDN WLVRTWMVLI 300
  301 PYLIEAILIT TVWEWIFNIW VIEKRIELMG VLGRRISIDD VLSIQSLRGN NTRKGEKTFT 360
  361 KNGSSSDSGG FHGRSGTRKP MAKFQNWIMN RPKRVTTESE ILSNNDINEL KEFSTFSNSS 420
  421 SNNDPSQRNS NSQLQNQTQQ VNTMQRNNDQ ILQQHNNLHL QNLDTDSAAS SSQSQALALH 480
  481 TEDDDVEYDD EYVDDYEIWD DDEDEEEEEE ISHHQRVSST HLVGSTVEEN DMHLGSSNNR 540
  541 HGSGDHMDLP PAFQPHPGFE AGDYWNDRKE G

Type	Start	End	Confidence
Non-Cytoplasmic	1	72	0.80
Transmembrane Helix	73	96	0.90
Cytoplasmic	97	104	0.79
Transmembrane Helix	105	123	0.85
Non-Cytoplasmic	124	152	0.89
Transmembrane Helix	153	172	0.91
Cytoplasmic	173	182	0.90
Transmembrane Helix	183	204	0.94
Non-Cytoplasmic	205	228	0.93
Transmembrane Helix	229	249	0.91
Cytoplasmic	250	265	0.87
Transmembrane Helix	266	287	0.91
Non-Cytoplasmic	288	297	0.86
Transmembrane Helix	298	317	0.92
Cytoplasmic	318	571	0.98