YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.814
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	308	0.82
Transmembrane Helix	309	332	0.83
Non-Cytoplasmic	333	340	0.54
Transmembrane Helix	341	367	0.81
Cytoplasmic	368	385	0.69
Transmembrane Helix	386	409	0.87
Non-Cytoplasmic	410	422	0.69
Transmembrane Helix	423	446	0.85
Cytoplasmic	447	454	0.74
Transmembrane Helix	455	476	0.89
Non-Cytoplasmic	477	529	0.84
Transmembrane Helix	530	552	0.84
Cytoplasmic	553	568	0.95
Transmembrane Helix	569	591	0.91
Non-Cytoplasmic	592	653	0.94
Transmembrane Helix	654	676	0.80
Cytoplasmic	677	699	0.87
Transmembrane Helix	700	721	0.88
Non-Cytoplasmic	722	734	0.80
Transmembrane Helix	735	757	0.93
Cytoplasmic	758	777	0.96
Transmembrane Helix	778	800	0.93
Non-Cytoplasmic	801	802	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDLEGSDSD SSSLSIHENI LFPSLGNSKN NKTRNTQKSS RDDVNSLETN SDSVNHLRST  60
   61 FIARDRQLPS STNDDYALEE VDLSDVSPLA SRQHVVSPFS TTSISDTVSL DSSILNKIAS 120
  121 NIGGNTDGID QTGKFKYLRL YEKWKKIKIK TQDQKLTKPG QDIPLQTMSS RASSVFNLSQ 180
  181 LDDFTRYVKE TSLNDRIFHD LQERLPQRNQ GGQSGRQDEN FQNYLDLDLD VVDEKDLADK 240
  241 FYPTQEDEEK ETDRNKRRLF PKRSKKKSLG MSAESRTATN DFLDSYQSSS SDVVSDDPRF 300
  301 LQRKLSVRHL QMISFGGTIG VGLFLNSGKA IAMAGGFGAS LAFTIVGTLV LCTIMSFCEM 360
  361 VTFVSVIDGV SGLSSRFIDD AFGFAAGWLY FLSFSTGVAG EVVAGVIMLS YYPHLNTATN 420
  421 TGSTAGFVTL FLALILGSNL VHIQFFGELE YISSLVKMIW AIIMMIVMVV LNRGGFPNTP 480
  481 VMGFKYWQYS KSDFANNIIF GLFRPAFNLH DDGTSSPSEG IGGDKGRFMS LLTAILVVCY 540
  541 AYSGTEIVCI AACEAKNPRK ALPSATRRVF WRIIIFYVLS AFLVSLNVYA GDPRLLRYYS 600
  601 GSTGISPSEF ATNPAVIQAG GEHCSIDYKV VAGYGSGAQS PWIVALQSSS LCQFSSITNG 660
  661 FLVFFAVSCG NAQLYVSSRT AYSLALQGKA PKFLTYCNRF GIPYNAVLFA GSFGLLAFAC 720
  721 VNESATVVFQ NLTSLIASSG IFVWFTMCLT FIRFYYGLKR RPDILDRNDK SYPYKSPFQP 780
  781 YSAIVGCIGT LFILFLWGLW CF