YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4341
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIIQIVQY ENIARSMISL AIASYLSFSP IYLLPSILAL GHAIIRDKAI SAKQQQEKKE  60
   61 GEEDKEQTNA KDLIVKLYVE GLAIFIICVI LLIMISFIIT ASWQFLDNAY LTIILFKNPI 120
  121 PNIGLWWYIF IEMFENYTSF YLIVFNVYTW IFILPFTIRF FQYKNNKITS LLGDSFLAVI 180
  181 LCLCWISFIK PYPILGDLGI VLSLLPILND TIVQYCKLKY ITGMTLIIGL LLAPIFYYIW 240
  241 IVLGTGNANF FYSITLIWGA IHGLILMDLI WTKLTLDYYN DNGIDINGEG GSLGLSLAQI 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	16	0.65
Transmembrane Helix	17	41	0.77
Non-Cytoplasmic	42	80	0.66
Transmembrane Helix	81	103	0.90
Cytoplasmic	104	109	0.57
Transmembrane Helix	110	130	0.66
Non-Cytoplasmic	131	137	0.82
Transmembrane Helix	138	161	0.87
Cytoplasmic	162	167	0.91
Transmembrane Helix	168	189	0.91
Non-Cytoplasmic	190	193	0.86
Transmembrane Helix	194	213	0.84
Cytoplasmic	214	219	0.80
Transmembrane Helix	220	241	0.92
Non-Cytoplasmic	242	249	0.71
Transmembrane Helix	250	271	0.88
Cytoplasmic	272	300	0.90