YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11768, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFNTPFSED LERTATNDSH RYKDYPEFDS LSTSIEKQLH YINSELLSSI RSDLAKFEKD  60
   61 KTDTSLSESL SGQFRKTTDA FKKVNKFVKS LNASIVTTER EHEDVETINY LKQKEAIQIK 120
  121 LIRDSLANFN NFQKRFELCQ TTQLPEDGTN LSETEPGSVQ QSQQQVQITY EPINAEELEQ 180
  181 QTLLIQERER EIHQIQQDTQ EINDIFSNLS SIVNEQQFQI DSIENNIFSY SSNAREASNE 240
  241 LRRAERYQKR SSGRLLCCFM ILVAIASFII LIGLIF

Type	Start	End	Confidence
Cytoplasmic	1	251	0.98
Transmembrane Helix	252	275	0.91
Non-Cytoplasmic	276	276	0.98