YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4240, orf1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYLLRCTFT IGLLAYTALA SPGDDLYAFQ DCLYQCEQIT CNNNPYHIIQ QEFYTELSNN  60
   61 PDYEFRYYNP HWQFDPMPLP LHLRLLGWNC ESNCDYQCQR IITGERIKNH EEIYQFHGKW 120
  121 PFLRVLGIQE LTSVVMSLGN LYVNYQSFKK IWSSVITNDS VPSNLKYQFT NIFVVQIVTM 180
  181 CAWLFSTIFH VRDYILTERL DYYFAGLTVL TQFHALGARY FNLYKHSRVV YRWLFSLACI 240
  241 LAYVYHVHRL YTDWSYTYNM QANICVGLSQ NVFYCLVCFG LYVKYYNLEQ TENKVILNHL 300
  301 NYVDSQRIIL SSFFTRSSKL FSLYPLLLCF IVVCGMALEV FDFPPVFFDL VDAHSLWHLV 360
  361 TIVPVYMGWY DWLVWDVYEN VWSNIQEEDK KKKE

Type	Start	End	Confidence
Signal Peptide	1	20	0.85
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	168	0.79
Transmembrane Helix	169	191	0.82
Cytoplasmic	192	228	0.49
Transmembrane Helix	229	247	0.94
Non-Cytoplasmic	248	263	0.67
Transmembrane Helix	264	283	0.74
Cytoplasmic	284	319	0.89
Transmembrane Helix	320	341	0.92
Non-Cytoplasmic	342	353	0.81
Transmembrane Helix	354	374	0.83
Cytoplasmic	375	394	0.83