YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI11_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAAIRPMKK TVSFSKDVSN NNNNLESDSD TKQSPQSYLT FIPQIKNSLL VVPFHNIFIL  60
   61 VGMFYSGLTQ DLETVMWKGF LTSIPIQVIY NYIIYINLLP LKKSTRNDHQ NNSSGSAINN 120
  121 NNNNNNNNVP LLIGSSIFVS IVLSLPLFVV IILMGAPVYK YSLKTLYLSL HLSQLIFNPL 180
  181 IILSNLNVNK IKRLFKQDHL YRIIFHHGIL SSVLLTLGGC WLGVIPIPLD WDRPWQQWPI 240
  241 TLLVGGYLGG VVGGVLSLIV NYFSH

Type	Start	End	Confidence
Cytoplasmic	1	48	0.94
Transmembrane Helix	49	68	0.90
Non-Cytoplasmic	69	75	0.79
Transmembrane Helix	76	96	0.83
Cytoplasmic	97	135	0.86
Transmembrane Helix	136	156	0.91
Non-Cytoplasmic	157	166	0.74
Transmembrane Helix	167	188	0.85
Cytoplasmic	189	202	0.93
Transmembrane Helix	203	225	0.92
Non-Cytoplasmic	226	239	0.84
Transmembrane Helix	240	263	0.89
Cytoplasmic	264	265	0.88