YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2756, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFRFFGDL SHLASIFILL YAIETNRSTN GLSLKTQILY VVVYFTRYLD LFTKFYSLYN  60
   61 TSLKLVFIAS SIYTVYVMVY KYKKPIQENI DNFPLKYLIG GAILASLIFT HKYSIGEIVW 120
  121 SFSLWLEAVS ILPQLYILQK TGEAENITTH YIFALGIYRA LYIPNWIYRY FAEGHFDFVS 180
  181 VLAGLLQTGI YSDFFYIYYT KVMKGKKFEL PV

Type	Start	End	Confidence
Cytoplasmic	1	5	0.73
Transmembrane Helix	6	24	0.74
Non-Cytoplasmic	25	60	0.72
Transmembrane Helix	61	80	0.85
Cytoplasmic	81	92	0.89
Transmembrane Helix	93	111	0.92
Non-Cytoplasmic	112	117	0.68
Transmembrane Helix	118	138	0.73
Cytoplasmic	139	146	0.74
Transmembrane Helix	147	168	0.71
Non-Cytoplasmic	169	177	0.77
Transmembrane Helix	178	199	0.87
Cytoplasmic	200	212	0.91