YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2726, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKPLIRFQ VIHYYLIPII ALIVWWGMLI AMLSCWGAQG RPIYSFMNGE YQNPVYISDI  60
   61 GATNLQPLFI SCSGFQAIFF VGTLIMGFYL RYKSGKIQPY ISKHQPRLAI ASIICAAIGQ 120
  121 LGIVFVAIFN TKNFHPVHIS MVGVFIAFCF LACVCDFTIS FIFGTNPSKL DPVHDQVVFG 180
  181 TSKFADLYFV SFMLKLVWLF AAVAFAICFG VYMKNDQNSK SAIFEWLISF WYGLLLVMWS 240
  241 MDLLPSALRK YRFKHPDMYP RYVQYHGNVN NNKANDYESQ WIKDAREGNS SSEIDDNRTY 300
  301 VGNGGPMSPR LS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	36	0.87
Non-Cytoplasmic	37	66	0.94
Transmembrane Helix	67	90	0.89
Cytoplasmic	91	107	0.93
Transmembrane Helix	108	129	0.95
Non-Cytoplasmic	130	138	0.80
Transmembrane Helix	139	163	0.86
Cytoplasmic	164	191	0.91
Transmembrane Helix	192	213	0.89
Non-Cytoplasmic	214	221	0.94
Transmembrane Helix	222	244	0.84
Cytoplasmic	245	312	0.97