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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.2680
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTQTSSTS QTGIQNNSNS SEPSNNNSLQ VPTPPTTRRK RGLSLRSQLF NKAFNIQPQP  60
   61 SEEIQSSVPH LQSPESNNNL ANETNTYPTF DHPQQNIELQ NIPITPEINV YEAPDQFPTS 120
  121 LTSISNNDLH TNYPSHLSRS TTHLTAGSNR TSISTQSFIS KRERSDWKRY GSKNRFYQVL 180
  181 VDIKNRIFHI KDLPPTEEGR IIPLTVDPKS TNSYYQDEYY DKKSKGYIDE RSNEPYIDNM 240
  241 ITSSKYTVYS FLPKQLKAQF SKVANCYFMV VAIMQMIPGW STTGHFTTII PLCIFMSISI 300
  301 AREGFDDWKR HGHDKEENNK RTTVIKEDEE LSNFDTHSIT TIMTETIPVT NRHHTSDINN 360
  361 NNNNHNNKNS LNNLLAISST SSLSDIDDSV SKEDLCFTNS ELMRRYNLKE YTTKWKNVKV 420
  421 GDIVKINENE WFPTDVILIA TSELETQEAF VETMALDGET NLKQKSPHPE IAKKASTVTG 480
  481 LKNLRTLVTV EDPNKDLYNF EGSFILNGEK HPLGPDNVVY RGSILRNTKS VLGLVIFTGE 540
  541 ETKIRMNNIK NPRTKAPKLQ KNINYIVIFM VFVVVMLSAF STMAQRLQFE SYKNRAWYLY 600
  601 GQDAGVAATL MGFIIMYNTL IPLSLYVTME IIKVMQLCFL QFDIDMYHVE TNTPADAKTA 660
  661 TILEELGQVS YIFSDKTGTL TDNKMIFRKF SVCGVSWLHD LDIMLSEKQE PNSQVTAPLV 720
  721 PRHSVHIQSP VTNRKSINGR SSIESTHRAS TTSIVRESMD IPSPRTSTAA WKSSAQPNKV 780
  781 QDLSNSLQLL RHIQSHPQTL FAKKAKFFLL SIALCNTCLP KKKENESKCN SNNSTFSLEE 840
  841 TGTEEDPQDD ACITYQAASP DELALVQAAR DLGFVVYDRQ NSKLTIKTYP DGFSNEPKYE 900
  901 EYQVLDVIEF SSARKRMSIV VRFPDNRICL FCKGADNVIL EKLKNSKLAQ AKAREISLQS 960
  961 AERKTQEADV ILQSRLSQEV EARKSGLSFR HSLNLGSANS TRINTIDNAL MGTEEGEIAD1020
 1021 IALKARKSLH FQQSKKYNLD SEECEDGAET SPNTTTVGGI SSELPPHYIP NDKLLVNDEF1080
 1081 LIEKTLEHIE EFSTEGLRTL LYSFKWMDKK EYEIWSQEYG EAKTALSDRS KLVEKVGAKV1140
 1141 ETNLQLLGAT AIEDKLQDGV SEAIDKLRRA GIKLWMLTGD KRETAINIGY SCRLIKDYST1200
 1201 VVVLSNDEGR DALVDRLTSS TQEIKAGRVA HSVMVIDGGT LADVESDPTL LTSFLELCVE1260
 1261 VDSTICCRAS PSQKANMVTA IRNLKKDCVT LAIGDGANDI AMIQSADIGV GITGKEGLQA1320
 1321 ARSADYAIAQ FRFLLKLLLV NGRYNYVRTS KFVLCTFYKE LLFYLTQCIY QRNTLFSGSS1380
 1381 MYESWSLSMF NTLFTSLPVI CVGMFDKDLK PATLLAVPEL YAKGRLYQAF NLKLFISWMV1440
 1441 LATLQSVGIS FLSFYVWGFT ALRDNTTFAL GSLVFTVLVV VINAKCTLIE MQNRQWLAWA1500
 1501 SFIISVGGWG IWNVLIMGLY RHKQPTIFFV DYGLIMWGRD QSWWATLLLM ITIPLFFDIL1560
 1561 VKVFKFMFKP NDDELFRVYE KDLELRRFFE NSAFRELYQS WTFPHDQSTT KTQILKALRK1620
 1621 IGLKVGSNSQ NDSLEDKLQA NQDHYSSDDL QSAISRKRAG TNPLTHELPP SGEGFNVYSS1680
 1681 DFKPQLQHFE NGYEILPSGK RVKIRDKSRG WSISKAFGKD EEEDVDAIID QRLNNLRNEE1740
 1741 DGNSSLK

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