YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573470
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	197	0.78
Transmembrane Helix	198	218	0.79
Non-Cytoplasmic	219	223	0.49
Transmembrane Helix	224	245	0.82
Cytoplasmic	246	270	0.51
Transmembrane Helix	271	293	0.83
Non-Cytoplasmic	294	310	0.44
Transmembrane Helix	311	333	0.76
Cytoplasmic	334	334	0.31
Transmembrane Helix	335	358	0.71
Non-Cytoplasmic	359	374	0.71
Transmembrane Helix	375	396	0.89
Cytoplasmic	397	414	0.70
Transmembrane Helix	415	435	0.86
Non-Cytoplasmic	436	454	0.64
Transmembrane Helix	455	470	0.75
Cytoplasmic	471	505	0.82
Transmembrane Helix	506	524	0.96
Non-Cytoplasmic	525	530	0.81
Transmembrane Helix	531	554	0.91
Cytoplasmic	555	564	0.91
Transmembrane Helix	565	586	0.94
Non-Cytoplasmic	587	588	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEEDENTSL LSRRPSHSFL DTPIGSFKGP NSLHNFASSF TRAQSFAANK IDNSIHKKRS  60
   61 FFVSGDGGTV EDDETFDPEL LVPSYRGERL STVMHDIQSR NQLFMNPPNQ LDQSVSPNND 120
  121 VFFHDDVMNA LNESRSRQNS TFGNSQFKHR IYSAPSFSSF RSSISAATTP SIFQVRKIED 180
  181 EDGNVVTVLA GQSTAPQTIF NSVNVLIGVG LLALPVGLMK AGWVYGIPIL LVCGLTTYWT 240
  241 ACLLSKAMDT DDTIMTYADL GYAAYGSMAK LVISVLFSID LLGAGVSLIV LFSDSLYALL 300
  301 GDDQVWTRTR FKILSFIVLT PFTFVPLPIL SIISLFGILS TISITILVMV CGLLKPTAPG 360
  361 SLLETMPTNL YPKSLPDLLL AIGILMAPFG GHAIFPNLKS DMRHPYKFTQ TLRSTYSITL 420
  421 LTDCSMAVLG FLMFGQNCSN EVTNTLLTTA GYPKWCYPLI SGLICLVPLA KTPLNAKPII 480
  481 STLDVLFGVA NISTNKIRET VNSLGRFVIR IGVNAVFVVL AILFPEFDKI IGMLGASICF 540
  541 IICIILPCLF YVRLCGSKIR GFERFMVYSA IFISCVLASA ATWAVLNY