YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68471219, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.94
Transmembrane Helix	71	88	0.78
Non-Cytoplasmic	89	104	0.59
Transmembrane Helix	105	128	0.81
Cytoplasmic	129	141	0.75
Transmembrane Helix	142	164	0.82
Non-Cytoplasmic	165	185	0.75
Transmembrane Helix	186	209	0.87
Cytoplasmic	210	229	0.78
Transmembrane Helix	230	252	0.92
Non-Cytoplasmic	253	259	0.67
Transmembrane Helix	260	278	0.95
Cytoplasmic	279	288	0.72
Transmembrane Helix	289	311	0.90
Non-Cytoplasmic	312	337	0.70
Transmembrane Helix	338	356	0.66
Cytoplasmic	357	363	0.64
Transmembrane Helix	364	385	0.89
Non-Cytoplasmic	386	390	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAPLVSESQ SSSIEETDEQ QQQYQQLARR RTIQSDLVDI EAESISSALP EGFNYEKKTT  60
   61 ATRFLDKTQK YYPVILNIVH GAIWGVLVRK GLMSLTTYSG SFLSGVIWAN FAACVVMGLA 120
  121 IDGEVFWIRL LEEKDYPNKG AIPVYTGLTT GFCGTVSSFS SVILEAFNKA ADTDIGVRHH 180
  181 YPNGAYGIMQ FLAVILAQFG LSIMGFHMGK QFSAVVDNYL PLVTKRIYKV LELTSMILGV 240
  241 VLVVITCILI GVKKQGSWRS WTFSMLFAPF GALLRYYLSK FLNNKVSNFP LGTFTANFLG 300
  301 TLLLAVFTLL ARGKLPGGKG HIVTNTIALH VLEGLDDGFC GGLTTVSTFV VELFGLKTLF 360
  361 SYRYGTISIL VCFAGVVLIL GSYNWSVGLD