YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573479
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.94
Transmembrane Helix	78	97	0.89
Non-Cytoplasmic	98	102	0.82
Transmembrane Helix	103	122	0.84
Cytoplasmic	123	267	0.83
Transmembrane Helix	268	287	0.94
Non-Cytoplasmic	288	299	0.77
Transmembrane Helix	300	322	0.87
Cytoplasmic	323	706	0.87
Transmembrane Helix	707	730	0.73
Non-Cytoplasmic	731	738	0.55
Transmembrane Helix	739	756	0.28
Cytoplasmic	757	779	0.56
Transmembrane Helix	780	800	0.65
Non-Cytoplasmic	801	807	0.76
Transmembrane Helix	808	829	0.72
Cytoplasmic	830	846	0.81
Transmembrane Helix	847	868	0.91
Non-Cytoplasmic	869	876	0.81
Transmembrane Helix	877	895	0.77
Cytoplasmic	896	917	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANPYDIEH KLPPQRANTP SLKYSQKSIE ETAADLQTDI KLGLTNSQDV LNRRSIHGIN  60
   61 ELNGDEEESL LWKFISSFYQ DPLILLLIGS AVISFWMGNK DDAISITLAI TIVVTVGFVQ 120
  121 EYRSEKSLEA LNKLVPAEAK LTRTGSTSSV LAQVLVPGDL VHFSQGDRIP ADIRLTEAVH 180
  181 LTIDESNLTG ENRPVKKTVD TVNSSDPAVT ERTDIAFMGT LVRDGHGSGI VVATAGQTVF 240
  241 GSVFEMMSDI EKPKTPLQQA MDKLGKDLSI FSFIVIGIIC LIGIFQGRSW LDMFQISVSL 300
  301 AVAAIPEGLP IIVTVTLALG VLRMARQKAI VRRLPSVETL GSVNVICSDK TGTLTQNHMT 360
  361 VTKIWTADFK GSFNTPFLAV ERLDDNTLHH QLTSNMHKVL ECGNICNNAR YSTESEKYVG 420
  421 NPSDIALVEC LPHFGLEDMR GQKQRLYELP FSSNRKYMAV CVHTGDIEKS ETIAKGATEK 480
  481 ILQLCDRYYD ENGSVKPLTE AIEESIHEKS RSLARDGLRV LAFAKNNKKF DEKTTEPTDL 540
  541 VFCGLIGMKD PPRPKVGQSI ARLMQGGVHV IMITGDSPTT AVNIARQIGI PVVGDHAVLT 600
  601 GDQIDSLSEE ALTKAIHDVS VFARTTPEHK VTIVKALQRR GDIVAMTGDG VNDAPALKLA 660
  661 DIGIAMGKNG TDVAKEAADM VLTDDDFSTI LSAIEEGKGI FNNIQNFITF QLSTSIAALT 720
  721 LVALSTFFGL PNPLNAMQIL WINILMDGPP AQSLGVEPVD HEVMNKPPRK RNDVILTQQV 780
  781 IKRVLQSAAI IIVGTMYVFI KEMTDGVITA RDTTMTFTCF VLFDMFNALS CRHYSKSIFE 840
  841 LGMTNQMFNF AVLGSLIGQF CAVYVPFFQS IFQTEALNFG DILRLVILTS TVFAVDEIRK 900
  901 WLRRRKTVYT NNYSYGV