YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573483
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLSINNNN NNRRYQSRRF DGITIIRIVV LVFIVTVSTY FVNSYTCNQP HHNHSTRPSH  60
   61 YLPINGTHGL MNNDDSLHNK GAIGHYNTTV SLERRADENN STTNGLFPST SSSTFIFTPS 120
  121 SSSSSTFQQS RSSPQTTSTS SFVATTSSFQ QETSQTSIPD TTTDFSFSSF SEAPTTSTTS 180
  181 STSEFSSTPQ ETSNTVTSTS STSTSSSSSP TSSPATTSAS QHVTTFSSVD NGKTIVVTRT 240
  241 SVISSSPTAS NSNNNKNNDN GGGLSHTNRI VVGVVVGVGG SILIGLLAVL FYLRKRNNRD 300
  301 YEGGWTFWRK NEKLGSDEFF NGELGVRDRN INQGSNF

Type	Start	End	Confidence
Cytoplasmic	1	22	0.93
Transmembrane Helix	23	42	0.94
Non-Cytoplasmic	43	269	0.98
Transmembrane Helix	270	293	0.90
Cytoplasmic	294	337	0.97