YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573485
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESTFFTSL ISGACAGIAT DIVFFPIDTI KTRLQAKGGF FTNGGYHGIY RGLGSCVVAS  60
   61 APSASLFFIT YDSLKRDLPP AVSSLGVRHM IAASMGEIAA CIVRVPAEVI KQRTQASHMG 120
  121 NQTSWSNLLH ILRNSNNEGV LKGLYRGWNS TIMREIPFTM IQFPLYEYLK VQWQQNLNSF 180
  181 IPQGFKGAAC GMIAGGVAAA LTTPLDVIKT RIMLHKDRIS IVSLVKNLIR EEGPAALFNG 240
  241 IVPRTCWISC GGAIFLGCYE LVHTELTKRS RL

Type	Start	End	Confidence
Cytoplasmic	1	5	0.44
Transmembrane Helix	6	27	0.78
Non-Cytoplasmic	28	47	0.52
Transmembrane Helix	48	71	0.77
Cytoplasmic	72	183	0.54
Transmembrane Helix	184	205	0.73
Non-Cytoplasmic	206	240	0.56
Transmembrane Helix	241	262	0.55
Cytoplasmic	263	272	0.68