YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573490
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKRGVSYNG LDCLADASSD AYMKYKHQSQ AEIPWVSQTK YAKYTVYFGI ATIFVAFVKQ  60
   61 IYYKYRDYTY RSKQSSNFGT SLIDIWISYC RYYGYKQLPT WLTYFSIPGS VGSASYMFLS 120
  121 SLYMLCYCLV PHFWYRGCAG FGSSPLAVRA GLMATALTPF IYVLAGKSNA ITLLTGISYE 180
  181 KLNTFHQYTG VACFILSVIH VVPFIYQDLA EGGSSNLKMN FKDSFEYYSG IPPLILLGLL 240
  241 CILSKSYIRK VVYELFLHAH WMMGIAYFGT LIWHINKELG ADDYMWGALA FWATQIIYRI 300
  301 LMKTAFKPNA MFLRSRQAQL EKLGSDGVYQ VVIGNTTGVN WKPGQHCYLR FAGVRILDSH 360
  361 PFSIASVDEE DKTAMKFIIK AQKGLTRKIY QELDKSITSN KNVYVDGPYG GTFRDPRSFK 420
  421 RVVLLATGTG VTATLPFLTY LAKTDSIVKR VSFIWIVRSQ EDIHWVKSEL QECQKLGGSK 480
  481 IDIHIHVAAK KSIYTKGDFE KEIESEETNL NEEDWLIDYG KPSVTSILKS MAGSLAARNM 540
  541 IVCSGSDSLK REVSSIVSEL QSLVFNNDLV RSNVEEIYLH TESFGW

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.45
Transmembrane Helix	44	63	0.63
Cytoplasmic	64	103	0.76
Transmembrane Helix	104	134	0.69
Non-Cytoplasmic	135	145	0.76
Transmembrane Helix	146	166	0.87
Cytoplasmic	167	184	0.82
Transmembrane Helix	185	206	0.91
Non-Cytoplasmic	207	226	0.91
Transmembrane Helix	227	248	0.87
Cytoplasmic	249	255	0.86
Transmembrane Helix	256	275	0.95
Non-Cytoplasmic	276	283	0.86
Transmembrane Helix	284	302	0.93
Cytoplasmic	303	421	0.97
Transmembrane Helix	422	442	0.78
Non-Cytoplasmic	443	586	0.82