YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573495
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	93	0.51
Transmembrane Helix	94	113	0.73
Cytoplasmic	114	121	0.74
Transmembrane Helix	122	141	0.90
Non-Cytoplasmic	142	147	0.77
Transmembrane Helix	148	169	0.93
Cytoplasmic	170	178	0.86
Transmembrane Helix	179	203	0.89
Non-Cytoplasmic	204	223	0.96
Transmembrane Helix	224	244	0.93
Cytoplasmic	245	325	0.97
Transmembrane Helix	326	347	0.85
Non-Cytoplasmic	348	370	0.89
Transmembrane Helix	371	391	0.87
Cytoplasmic	392	397	0.74
Transmembrane Helix	398	417	0.91
Non-Cytoplasmic	418	423	0.77
Transmembrane Helix	424	445	0.88
Cytoplasmic	446	454	0.80
Transmembrane Helix	455	477	0.87
Non-Cytoplasmic	478	484	0.76
Transmembrane Helix	485	506	0.93
Cytoplasmic	507	514	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIEKKQTK ISPASSVAHD EDTLANDELF QLTDSVLNKK LKLINDAIDE IGFTPYHLKL  60
   61 FFLNGMGYWT DTQLTYLESS VRTFVNYQFG YKYPVSNEML AAGLLVGALF WGFSADLIGR 120
  121 RLAFNLTLLL SALFTILTGV MNNMASYCIF VFLSCFAAGG NLVLDTCIFL EFLPHKDQWL 180
  181 LTFFAFFWGI GQTIAVALAY AFLPNNSCES ADNCPSHINR GWRYVYYTNG SIVLAMAILR 240
  241 LTLIRLQETP KFLVSNNRDQ EAVEILQRIA QKHNRTCSLT IEDLESLGKV EINDDYRKHI 300
  301 DIKGTFRLVT HHVQILFSNR TMARSSVLVF VSWLLLGISY PLYSSFLPVY LATRGANISA 360
  361 PDVHGVYRDN LISNCVSMGG PLIAGALLFC FPWLGRRGVL FIGGVASMAF LFGYTQIKTR 420
  421 AQNVALSSIS FASMYIYYSA LYAYTPEVFP SVARATGNAI AIACTRVMTC IVPVIAYYSN 480
  481 TSSSVPIWVC GAFVGVIGFL ALLFPYEPSK QRVV