YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7974, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	176	0.99
Transmembrane Helix	177	199	0.89
Non-Cytoplasmic	200	212	0.83
Transmembrane Helix	213	234	0.88
Cytoplasmic	235	245	0.81
Transmembrane Helix	246	267	0.88
Non-Cytoplasmic	268	275	0.68
Transmembrane Helix	276	297	0.89
Cytoplasmic	298	304	0.92
Transmembrane Helix	305	328	0.90
Non-Cytoplasmic	329	334	0.91
Transmembrane Helix	335	355	0.96
Cytoplasmic	356	406	0.96
Transmembrane Helix	407	431	0.87
Non-Cytoplasmic	432	450	0.89
Transmembrane Helix	451	471	0.95
Cytoplasmic	472	489	0.95
Transmembrane Helix	490	511	0.92
Non-Cytoplasmic	512	518	0.82
Transmembrane Helix	519	540	0.92
Cytoplasmic	541	550	0.79
Transmembrane Helix	551	573	0.85
Non-Cytoplasmic	574	584	0.84
Transmembrane Helix	585	609	0.87
Cytoplasmic	610	643	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKKASFES NHKELSASSS NEFNEVLEFT VSNYETLQQQ KELGSRRSSV HRKSLEAIKK  60
   61 CITGESNYES PETKDYSVHH IYGDLDSDAI EIQRTQTRNL ILTKLESRVE DNTNNYSNDN 120
  121 HEHEVECQDT ISVIPDTNIE IAQHGKEFDT IDPELITWNG PDDTEDPRNW PINKKIFLLG 180
  181 FVSLYALVAP MSSSMLSPAM TFIAEDFHIS SPIIKSMVVS IQILAWAFGP LIIAPLSEHD 240
  241 YIGRKLVLDV SCWMSLFFNL GCAFSQTTAQ MMVCRFIGGL FGCVPMNVCA GVISDMFDAQ 300
  301 SRNAALAGYS LVPLLGPVIA PVISGFIVDH KQWRWTFYVL CIFNGFVAIT ATFLFKETYS 360
  361 PTLLKRKAKK LREQTGNVNL HTIYEIADGE TKLGKIWLCM VRPIKLLFTH PMIVGLGSFM 420
  421 AFTYGFMYLM IVTFPEIFGN QYGYSKSVTG LMYIPMGIGF IIGVIFWTYM VGNVYERLTS 480
  481 RNNGVAKPEF RLPCLIASSI FIPVGLIWFG WSAQKKLHWI MPGIGSAIFA MGLVCVFQTI 540
  541 QNYLIDMNVR YAASSVAAAA LFRSLFGFSF PLFANKMYSA LGYGWANTMC AFIGIFLGVP 600
  601 FPIFCYMYGE KIRHWADKRI EKEQLKRDQK NLERLKLKND SVV