YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7953, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	123	0.98
Transmembrane Helix	124	147	0.84
Non-Cytoplasmic	148	155	0.83
Transmembrane Helix	156	177	0.93
Cytoplasmic	178	201	0.89
Transmembrane Helix	202	225	0.86
Non-Cytoplasmic	226	243	0.83
Transmembrane Helix	244	265	0.87
Cytoplasmic	266	271	0.84
Transmembrane Helix	272	292	0.91
Non-Cytoplasmic	293	314	0.86
Transmembrane Helix	315	337	0.82
Cytoplasmic	338	352	0.84
Transmembrane Helix	353	377	0.84
Non-Cytoplasmic	378	405	0.85
Transmembrane Helix	406	426	0.86
Cytoplasmic	427	451	0.91
Transmembrane Helix	452	474	0.87
Non-Cytoplasmic	475	485	0.81
Transmembrane Helix	486	504	0.91
Cytoplasmic	505	513	0.83
Transmembrane Helix	514	534	0.92
Non-Cytoplasmic	535	549	0.86
Transmembrane Helix	550	570	0.91
Cytoplasmic	571	608	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSSFDLEF NSDLQNKDNS PQPSSSNRLT ALEFNSENEN ESKNDNNNSS LPSSSDTIEM  60
   61 QPLDKSEYTK IPDVLVDDDD LIKAGNDTSS DTSNPYLRPS VELNGRISYL QDLEDLPQGR 120
  121 HLGLFSTVIL FVSRILGSGI FSITSGIYQD CGQSVALFFA AWVIAAIASF GGLYVFLEMG 180
  181 SLVPRSGGAK VFLEFIYPRP KLLATVAFSV YSVMFGFTIS NVLVFGEYLI HALGLEPSDF 240
  241 KTRFTGLIFL YFAAILHGVS VSHGVRIQNV LGGLKLVLVV VIVVAGIYVT AFPQSITGIE 300
  301 NQLEWDRVFE VRSSASVSTF ASAIIKASFA FSGWNSVHTV ANEIKDPVRT LKIAGPVSLT 360
  361 IMAVTYFIAN LAYLIVIPSD ELANGSTLAG SILFTKIFGQ FLGKKLLTLA VSLSAGGNIF 420
  421 VVIYTISRVD QEVFREGYLP FSRFMSSNWP YGAPLRTLLL SVAITTTVIV LFPGGDIYSY 480
  481 MVSLEGYPQQ LAIALIAIGI FIIRKRYPEL HSPIKAGVVG TIAVFLISLY LLIGPFVSSK 540
  541 SPNPKGLENW PNYGVVAIIC ILACIGFWYI KFRLLPWLGG YELVSEEVQL SDGLPVKKWK 600
  601 KLHSYNTL