YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.7946, orf1...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPLNSPYS RFNQGLNYNS RSSNQLVYGE SSSLNGSVDS NVLRVNSGSN SNPNDFITYI  60
   61 IPDFDAVTYF QKDFQALNEF HLCEESEASG FEIYLVEQWM NDRNISSVVT TFTGNESSKI 120
  121 SVVRFTILKK PAKYYPLRFQ EYLNELIQNH SRMKRIEKEK PTYQHSRTNS NSEMLTLSKL 180
  181 STTQIPKRES SSDYTSEVCF VANLTSLPSN LNLIPVPGGD SRKVSTAFMI NSNLKKLQCT 240
  241 GRSVSMITSK ISDASDDKFR QMYKIQSTKV PIVFAAKELV NIVQTCLFYF DLLDAKYCDG 300
  301 LLCTKTEEAI TNWWNLIGLP HFSVKPNPVN GILPSRTVAA IVSLILSVRM RIQLVGSSDV 360
  361 PKDPFDFENF MIAIGQFQRQ YKLDKTRKLD METLNKLFTV TNARLLPQKN TNYFYSQVST 420
  421 GSDLDPQSFD IISQSGNPKG LDSTSQKRRY GKELKKLTNV MKSSVSDRIN AASVRDIDDM 480
  481 SAPSKASSGR IRNKIAKLAD TVSPLDVETL DLEFLVKKHL NGKTLIRLFY GTQSSNTFLS 540
  541 VEKSSDPQNK GHRHNLVNTH NSHLAFPKRR GRTMVENSST LQYKFESLRD KIAQTQELVM 600
  601 INDPSRYSRG LNRMKLGLQS KKNPLTGGEK NSMLLTPGGN YYSSPMQTAS LVDSFLQISN 660
  661 DDASGVESVC SKPNSINRRC VNSVFDFKHP LASFKHNLNR RNSFPYLENQ HEQNLNTLVI 720
  721 AKNQSGINFE EIDLLKRKRS ISFSCVEDAV LSGKVQAIGS MTKFSQSFLD SIRVLMKYES 780
  781 LKSYYLEGEK KEKHVTNQQL NKSYQLMNLE LIKMKNLRNQ MDAHQSRIME GGIEEELHYS 840
  841 MKTLNTTIDR LVYETRIVAK RIDELEQDFK LYEMKLNDEC KSKLTEIIDK VLHSKQFKEV 900
  901 FTSPEERKQI AYKLTGDENY IKFDDEKESI GLLRMIVMFF YGIISSIFRF FHFNRDNMNL 960
  961 ERIRQAWVIL DPNRSIIKHA YSYIGREPSK DSIASTDSK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle