YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7881, orf1...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVSSFFTK LKFYLKSGLY GTLVAGCAIY GVLASIILRI VNKAEYAQYA VAKACYYVVS  60
   61 LFLGLKINIK NEKYLQNLPA IVVANHQSAL DIYVLGKVFQ PGYTVTSKKS LKYVPFLGWF 120
  121 MALSGTFFLD RSKSASAKKV LDGALTGLKN QGKALFIFPE GTRSATEDLT MLPFKKGAFH 180
  181 LARQAGIPII PVVVSNTSTI FNSKRKIFNT GEINIEVLPP VSTSDWETHE DVTNACNNIR 240
  241 DDMIKTLKKL GNSKIPGSKP REDFYPSESE DTSETDVEII NEQTPLKATA VSD

Type	Start	End	Confidence
Cytoplasmic	1	17	0.64
Transmembrane Helix	18	38	0.78
Non-Cytoplasmic	39	293	0.51