YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7870, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTFTSFLFF FFQFERYTIL VQLHPLILYL KMFSLGVQNR LFTRRALFSG FRFNSTTTTT  60
   61 TTASQPRLTW VDYFQLKKQN NRINTIAGVF TGLGGAFITL SYLGNIEIDV EKPIMGFDPL 120
  121 MVMGGAVILG GLVGFLVGPF IGSSIFRLTN RAQLKQFELK NTEFLSRLRI KRPDPSSQSF 180
  181 SNPIPDYYGE KIYSLKDYKQ WLRDCNAFRR KSKEFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.68
Transmembrane Helix	18	35	0.68
Cytoplasmic	36	82	0.91
Transmembrane Helix	83	104	0.90
Non-Cytoplasmic	105	121	0.86
Transmembrane Helix	122	146	0.86
Cytoplasmic	147	216	0.97