YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.333
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.97
Transmembrane Helix	88	110	0.87
Non-Cytoplasmic	111	118	0.83
Transmembrane Helix	119	141	0.93
Cytoplasmic	142	157	0.87
Transmembrane Helix	158	177	0.88
Non-Cytoplasmic	178	191	0.74
Transmembrane Helix	192	213	0.92
Cytoplasmic	214	222	0.83
Transmembrane Helix	223	244	0.86
Non-Cytoplasmic	245	258	0.89
Transmembrane Helix	259	283	0.80
Cytoplasmic	284	292	0.89
Transmembrane Helix	293	316	0.90
Non-Cytoplasmic	317	354	0.93
Transmembrane Helix	355	376	0.89
Cytoplasmic	377	390	0.78
Transmembrane Helix	391	410	0.95
Non-Cytoplasmic	411	418	0.81
Transmembrane Helix	419	441	0.82
Cytoplasmic	442	458	0.84
Transmembrane Helix	459	480	0.91
Non-Cytoplasmic	481	499	0.79
Transmembrane Helix	500	517	0.75
Cytoplasmic	518	526	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTENYDLEQQ ETQAPENQVN VEKILLDKSN VDEDPITSTI EQSSTSNSSL KKPTNWVDKI  60
   61 GLRINAEIRG IERVPESERH DNSLLSPFLV FLSPNMVISG LSIGSLGPVA YNLDFRTSII 120
  121 IITIFCIIGS IPVGFFSAFG MRFGIRQQIL SRYFTGNIMG RIFALFNVIS CIGWNAVNVI 180
  181 PCAQLLNSVG PLPPWAGCLI LVGCTCIFAV FGYKTVHLYE KYSWIPNFIV FMIIIAKFSQ 240
  241 THAFNWGEKK SGPTEAGNVL NFISAIFGFT VGWIPSSADY TVYMPANTNP WKVAFAMTTG 300
  301 LSLPAMFTAI LGAAIGTSVN LKGSRFEQAY NKNSTGGLIY EILCGDNNNQ GYRFIIVVFA 360
  361 LGAIANGIPG SYSLSLAIQC IWSQCARVPR IAWCILGNLV ALAFSISAYY KFQDTMSNFL 420
  421 SIIAYNVSIY LSISLTEHFI YRRGFSGYDV TDFNNYKTMP VGIAGVVAFC FGICSTVLSM 480
  481 NQTWYQGVIA RKIGDSGGDI SFEMNIMFAF IGYNLVRPFE LKYFGR