YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.273
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELRKIALS NSNLKNMASP SSSTPGSSGA SSPQGNGMAK TDSLVNLTQP ELYGIFRNDS  60
   61 NTSLSKEFEE DSAEIEFKVN SRLNKSTATT TTSSSSSSEA KYSKNEDFEK YLPLPLKIVV 120
  121 LTLASFIYNE VTSQINFNHT QSNYPLTIKH LFKISSYIHL DEYLAFVGQS KYGHLIDETF 180
  181 ALMIQGLVMA SFHPILDYYL PKSLTKRLLS SNPNPSSSTS YSTLINDLIR SSVAFLGVSY 240
  241 AIRNIEWSSF LQVAIIYSLV SPGLWLLLDG TISGLIGSLV VSIAACSVVY YQNYQYLNGV 300
  301 GDASPVELVA IWLWIGSFVF GGLIVFGKLG RFLFQ

Type	Start	End	Confidence
Cytoplasmic	1	178	0.54
Transmembrane Helix	179	196	0.37
Non-Cytoplasmic	197	246	0.44
Transmembrane Helix	247	268	0.61
Cytoplasmic	269	271	0.43
Transmembrane Helix	272	291	0.83
Non-Cytoplasmic	292	307	0.78
Transmembrane Helix	308	330	0.89
Cytoplasmic	331	335	0.74