YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2117, orf1...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSNSDSSS TGDVPNINTL LIPSISKPVY SRIPIPGHLS NDQSTPIEDI KIIDKQSIDY  60
   61 IIRSGLAGGL AGSCAKTLVA PLDRIKILFQ TSNPEFIKYR GTFGGFIDAG KRIWKADGVM 120
  121 GLYQGNSVTL LRIFPYAAIK FVAYEQIRTF LIPNDSYETA ARRFMAGSLS GLASVFFTYP 180
  181 LDLVRVRLAF ETRNLSHSQI HHHHKEFMAH RRGRIFSTVS LIYNENPPIK TTDPSWLKLM 240
  241 RKSFPSPINH LANFYRGFAP TILGMIPYAG VSFYTHDLLH DILRSKWLAK YTVQSTNHQN 300
  301 VVVKKKGKSS RESRAPLKAY AQLFAGGLAG LCSQTAAYPF EVIRRRMQVG GAINQGQFLS 360
  361 FKNTAKLIYR ENGLQGFFVG LSIGYMKVVP MVACSFFVYE RMKKFLGI

Type	Start	End	Confidence
Cytoplasmic	1	163	0.52
Transmembrane Helix	164	181	0.45
Non-Cytoplasmic	182	256	0.59
Transmembrane Helix	257	276	0.52
Cytoplasmic	277	318	0.67
Transmembrane Helix	319	338	0.75
Non-Cytoplasmic	339	376	0.82
Transmembrane Helix	377	399	0.79
Cytoplasmic	400	408	0.80