YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9663
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPRSIILSV VATAAVTIGL VEAFHCYERK KIHPQPPKET PAKRDHSKEL IREQLARNYA  60
   61 FLTEDGMDKV RKQRVVVVGA GGVGSWVATM LARSGVESLR IIDFDQVSLS SLNRHAVATL 120
  121 KDVGIPKVEC IKNHLLEIAP WIEIDTRNQL WNLESAEELI YGDDFQPTFI VDCIDNLDTK 180
  181 CDLLAYCHEK KLPIVSSGGA ATKSDPTRIN LADISKTEED PLMKKIRVVL KKRGIINGIP 240
  241 VVFSAEKPDP RKAKLLPLPD DEFTKGNVDQ LSALKDFRVR ILPVLGTMPG IFGLAIATYI 300
  301 LSTVAGYPME PVEGKNRYKI YDDLLQSLAG QQTRIGKTDQ RVQIAMHEVN YILEEVFRGK 360
  361 SPISNYSTRL TLSRWDPSKE ISLQNVVVMT KDEQRNHEKR VLNGGEKIED VYSKEVVDLV 420
  421 KSRFEDEKYF SQFR

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	434	0.83