YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2113, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVEASSGT NKNPVSTATS TVGESATATT ETSTELRANF AEVTDPKLNA KPQSSPLLSS  60
   61 TPPSVSKALV NSYPYLIIIN KLLSITTWTN DDYWVNVVII SLYALVVLYF ENLVIWSGHL 120
  121 ILVAILISYA LLNNKIIKEA NLHPTLDDVV QALTSTCVKA DILLSPITSL SLTAYDIKRL 180
  181 IFTTLFLTPV YLVVTFLLIK PRTILLLTGV YLLTYHSSYS IVTRRILWKL KIVRLIFFYL 240
  241 TGLDLSETKN HSLFAAAFAK VSSSGTSSKS NKPVRFTYVI YENQRKWLGI GWTSNLLSYE 300
  301 RTPWTDEFLN ESSSIDSFKL PNAADDATNG DSNMQGATWR WVDKTWRLDL TNDGAITLSS 360
  361 SKRSKTTANP TNDEGFIYYD NTWKKPSTED TFSKYTRRRR WIRTAELIFD NKQEEALESS 420
  421 ENVKATGVSV QDATTTKKVK SLRFAEDESN VEESADTDKK ND

Type	Start	End	Confidence
Cytoplasmic	1	91	0.88
Transmembrane Helix	92	110	0.75
Non-Cytoplasmic	111	114	0.69
Transmembrane Helix	115	133	0.89
Cytoplasmic	134	179	0.89
Transmembrane Helix	180	199	0.91
Non-Cytoplasmic	200	206	0.68
Transmembrane Helix	207	228	0.58
Cytoplasmic	229	462	0.63