YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9656, orf1...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFIPIIILI YLVSIAASDK SPKIKKNPRN VVAVADFPFG GDTQVKGNVV FSAKEGKHVN  60
   61 VHIDMTGLPK DEGPFFYHIH ERSVPGNGNC EAVGLHFNPY NASPVCDEQK NDAYCQVGDL 120
  121 SGKHGCINTT CFELKYSDPY LSLNRKSKSY IIGKSVVFHY PNLTKIACAD IEEANELRLQ 180
  181 SLIDEYTQTD DAIQLKELNT PLETDYKFDE VEALSSEIYH SDTDPDPPQQ ELISTEKLYN 240
  241 KTDNVYSPEE TRPSDQNKKS HRHSLLPLAK WKKNSPKNYS NISIHGISSD CLNDGMMVTG 300
  301 SVFGSLVLGI AAGIFV

Type	Start	End	Confidence
Signal Peptide	1	18	0.72
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	316	0.86