YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GET1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPDLHPYT ILLSIFLVLV AKQLVATIGK STIQEFVWLV YLKVSSNQSI KTYNSKQHEL  60
   61 HETNRQKRAI SAQDEYAKWT KLNRQADKLS AELQKLNQEI QQQKSSIDKA SNALILVLTT 120
  121 LPIWIARVFY RKTHLFYIRQ GIFPKYVEWV LALPFLPNGA VGLTIWMFAV NSVVSNFSFL 180
  181 VSFPFAKRVS KPVRDTKVE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.24
Transmembrane Helix	7	27	0.44
Non-Cytoplasmic	28	109	0.54
Transmembrane Helix	110	130	0.83
Cytoplasmic	131	148	0.48
Transmembrane Helix	149	170	0.72
Non-Cytoplasmic	171	199	0.44