YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2072, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	78	0.98
Transmembrane Helix	79	102	0.85
Non-Cytoplasmic	103	110	0.77
Transmembrane Helix	111	131	0.92
Cytoplasmic	132	157	0.89
Transmembrane Helix	158	181	0.83
Non-Cytoplasmic	182	201	0.76
Transmembrane Helix	202	221	0.93
Cytoplasmic	222	230	0.87
Transmembrane Helix	231	251	0.93
Non-Cytoplasmic	252	269	0.91
Transmembrane Helix	270	291	0.87
Cytoplasmic	292	311	0.87
Transmembrane Helix	312	333	0.92
Non-Cytoplasmic	334	363	0.94
Transmembrane Helix	364	386	0.84
Cytoplasmic	387	414	0.86
Transmembrane Helix	415	436	0.91
Non-Cytoplasmic	437	441	0.84
Transmembrane Helix	442	464	0.94
Cytoplasmic	465	473	0.92
Transmembrane Helix	474	497	0.91
Non-Cytoplasmic	498	510	0.88
Transmembrane Helix	511	531	0.88
Cytoplasmic	532	569	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSIEKKDS NSSKRASVGK GEIHNILSNR VTNHVTTNLD ALAVADDKKA ERLLKEAQAN  60
   61 LELVAETGYS PELRRNFSIV SLLGIGFGIT NSWFGISGSL VAGISSGGPM MIIYGIIIVA 120
  121 VFSVFIGVTL SELSSAYPNA AAQIYWAQKL APPKYARACA YFTGILSAAG STFTTASVNM 180
  181 TSATAIVGMY MLHHPEKTIE RWQVFIVYEA ITVLLVFFNI YEKPLPMISS TTLYTSLFSF 240
  241 VVITIVVLSM HDGDFQSPHF VFVEFNNGTG WSSSAIAFIV GLINPNWSFS CLDAATHIAE 300
  301 ESLSPATDIP KAILGTVAIG FITSFTYSIA MFFSIKNLDE ILSSNTGVPI LDIYYQATNS 360
  361 KAAAVGLEFL ILLTSLGCSI GCSTWASRII YSFARDNGLP LSKVWAKVDS RTGNVVNAHL 420
  421 LSNFWVMVIG CIYLGSSTAY NSILISCVTF LLLSYLIPTV FLVFKRNKIR HGPFWLNGFG 480
  481 LVCNIGLIVW AIFAFVFYNF PNVMPVTGSN MNYSSGVFGV CLIFSVADWT LRGRHQYTSL 540
  541 EEREKVKDEL ASQVSNQITN IQSIVSNRH