YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9593, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVPSSPIR NDSSFMVAEG QEARLRKEIK KTILDFDSNQ SYIEEEDRTY IYNNSSILDD  60
   61 DDELEDAEAE DDEDSYELDD TEIEIEEDDS SIVLEKVANS TTDFSKDSNS SATEKPSLTF 120
  121 YQFFKKHEIP RKLFHSSIGV LTLWLYTIGV TVPQLFIPLG SVFTVLLVND LVRLNNPVLN 180
  181 EKICSVMSFV IRDNEYNSYN GTLFYLVGVL IVLYAYPKDI SVLSILLLSW ADTAASTFGR 240
  241 AFGKYTPQIA SGKSLAGCLA SCVTGVLTAY LWYGYFIPQY NYWNQPGEIY WNASSNKLSL 300
  301 PIYSLLIGVI TSISEVIDLA GIDDNFTIPV LSGTCIYWLV RLTQQ

Type	Start	End	Confidence
Cytoplasmic	1	132	0.96
Transmembrane Helix	133	157	0.79
Non-Cytoplasmic	158	200	0.60
Transmembrane Helix	201	234	0.65
Cytoplasmic	235	253	0.62
Transmembrane Helix	254	274	0.93
Non-Cytoplasmic	275	299	0.79
Transmembrane Helix	300	319	0.61
Cytoplasmic	320	345	0.45