YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1989, orf1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSIYLIIS LFSSFSHAIW LDTNNETTIR EDCNIIAKGL LDYYEGTKYG GVIGMFSWPY  60
   61 YWWEAGGAWG SLIDYTFYFD NDTLVPLITD ALLYQTGDDD NYIPLNQSTT EGNDDQAFWG 120
  121 IAVMAAAERN FTNPKDPTKA WLTLAQAVFN TMQARWDTET CNGGLRWQIF QWNSGYDYKN 180
  181 SVSNGALFHL AARLARYTGN DSYVVWAERV WDWMYGVGLL TEQNWWFVYD GVKIANNCSN 240
  241 ITKYQWSYNQ GLMLAGCAYL YNYTEEEKWY NYTIKLLESA QVFFKNISGS MVMYEAACQP 300
  301 SNSCNNDQRS FKAYFSRFLG LTSVLVPQTE PVITKWLVDS ANGAAGSCSG GSDGVTCGLS 360
  361 WTDWSQGWDG KWGLGEQMSA LEVMQNLMVH KRPAPYTADT GGSSIGNPAA GYGKLTSDAT 420
  421 PLSIDGGDKA GAGIITAIIG ASLVGSCVWL IL

Type	Start	End	Confidence
Signal Peptide	1	18	0.98
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	429	0.99
Transmembrane Helix	430	451	0.67
Cytoplasmic	452	452	0.69