YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2023
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.99
Transmembrane Helix	40	62	0.89
Non-Cytoplasmic	63	95	0.91
Transmembrane Helix	96	115	0.94
Cytoplasmic	116	124	0.81
Transmembrane Helix	125	144	0.95
Non-Cytoplasmic	145	151	0.77
Transmembrane Helix	152	173	0.93
Cytoplasmic	174	182	0.83
Transmembrane Helix	183	205	0.88
Non-Cytoplasmic	206	215	0.88
Transmembrane Helix	216	237	0.90
Cytoplasmic	238	301	0.98
Transmembrane Helix	302	320	0.86
Non-Cytoplasmic	321	340	0.84
Transmembrane Helix	341	362	0.89
Cytoplasmic	363	368	0.95
Transmembrane Helix	369	389	0.94
Non-Cytoplasmic	390	409	0.88
Transmembrane Helix	410	433	0.86
Cytoplasmic	434	445	0.85
Transmembrane Helix	446	467	0.86
Non-Cytoplasmic	468	472	0.73
Transmembrane Helix	473	495	0.90
Cytoplasmic	496	546	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDNVSSTS TAEAVNNEIK VKDEFRQEEQ AHTSLEDKPV SAYIGIIIMC FLIAFGGFVF  60
   61 GFDTGTISGF INMSDFLERF GGTKADGTLY FSNVRTGLMI GLFNAGCAIG ALFLSKVGDM 120
  121 YGRRVGIMTA MIVYIVGIIV QIASQHAWYQ VMIGRIITGL AVGMLSVLCP LFISEVSPKH 180
  181 LRGTLVCCFQ LMITLGIFLG YCTTYGTKSY SDSRQWRIPL GLCFAWALCL VAGMVRMPES 240
  241 PRYLVGKDRI EDAKMSLAKT NKVSPEDPAL YRELQLIQAG VERERLAGKA SWGTLFNGKP 300
  301 RIFERVVVGV MLQALQQLTG DNYFFYYSTT IFKSVGMNDS FQTSIIIGVI NFASTFVGIY 360
  361 AIERMGRRLC LLTGSVAMSV CFLIYSLVGT QHLYIDKPGG ASRKPDGDAM IFMTSLYVFF 420
  421 FASTWAGGVY SIISELYPLK VRSKAMGLAN ASNWTWGFLI SFFTSFITDA IHFYYGFVFM 480
  481 GCLVFSIFFV YFMVYETKGL TLEEIDELYS TKVLPWKSAG WVPPSEEEMA TSTGYAGDAK 540
  541 PEEEHV