YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7672
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTIVENIQ RIPPVTRFFT LASVMTCLAI TSFDALPGLF CNYHTLSNDF AGIYKVYQKG  60
   61 NSFNTAKAIA LQVINSYKFL TSTLIPSDVL SSQRWNALMD IYFFYTFSNH LEAYGGKFNG 120
  121 NFPDYLWYAI TCGTMVNVFA LFYNAFFDPM PIFPHDCLLA CLTYTWSRAN KNAKINLMGI 180
  181 VPIKAYYLPL GNILIKLILR GPSGLVDTII GILSGYLYLC IQSNTLPVYN LLPDAYGKNT 240
  241 EQHTDARRVG ISRYVDNGGS QYEYIGDSIY DKGYWKAPKF FYNLLGYPSK NSVRTTAFDS 300
  301 TPRNEESATT GYSWFGSGAT AFRGKGHRLG S

Type	Start	End	Confidence
Cytoplasmic	1	17	0.85
Transmembrane Helix	18	38	0.81
Non-Cytoplasmic	39	124	0.80
Transmembrane Helix	125	146	0.87
Cytoplasmic	147	202	0.68
Transmembrane Helix	203	220	0.49
Non-Cytoplasmic	221	331	0.52