YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68473247, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	241	0.56
Transmembrane Helix	242	266	0.87
Non-Cytoplasmic	267	398	0.59
Transmembrane Helix	399	429	0.76
Cytoplasmic	430	486	0.81
Transmembrane Helix	487	508	0.89
Non-Cytoplasmic	509	520	0.74
Transmembrane Helix	521	543	0.86
Cytoplasmic	544	551	0.68
Transmembrane Helix	552	575	0.78
Non-Cytoplasmic	576	586	0.77
Transmembrane Helix	587	608	0.89
Cytoplasmic	609	619	0.85
Transmembrane Helix	620	640	0.91
Non-Cytoplasmic	641	681	0.92
Transmembrane Helix	682	703	0.91
Cytoplasmic	704	767	0.96
Transmembrane Helix	768	786	0.91
Non-Cytoplasmic	787	804	0.81
Transmembrane Helix	805	827	0.75
Cytoplasmic	828	837	0.61
Transmembrane Helix	838	857	0.91
Non-Cytoplasmic	858	867	0.77
Transmembrane Helix	868	890	0.88
Cytoplasmic	891	896	0.79
Transmembrane Helix	897	916	0.94
Non-Cytoplasmic	917	923	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTPIQGSS SKPNVAAEDY SRSSSRTNIS SVRNRSATRM KKNSRPNLKR LGSVSHPQGL  60
   61 VYSVDDDINE NDKDDSTKES EPKSDRDYLE GYNDALRALS NRKGRTSSGH LSIAGTPLRS 120
  121 PEEIATIESK LAKDLTDAEE QMRLLEDLDS GPTPNVTDEF VEPEDNNEDA GSIKSTSTVE 180
  181 SLNLKERQNA INSTHPFGIK IWKPSLYKKK RSVATRAEED IHDFDPRKPT ARIYWGVKLT 240
  241 NIVWSLTAGL LICLICLLGA AFVFIFSGFA IERKSRPYVK ALLKLGHYWL YPFGKFVLLN 300
  301 REQNYLDEDQ LEGRTINEFH QWRLQEEGRL FFAPPRRYTG SESTRPLLKD HRGRPLRDAY 360
  361 SSLDDGIQEE EDEQDNDAND IKVRFFGRGD WSFGRIAFYV YFYGIIQPIS FFIGILCWLI 420
  421 VFTIPMAKIT NTMNDHMRRH PLALDYELEK DYYKRVERTP RKKNQVILLC TYRCCGFHYY 480
  481 KYTIDGTNIF FINLLSVVIF AILDYYFLKE TMHWDSWITE SNFIFCLSLF SIIPLAYFIG 540
  541 QAVASISAQS SMGVGAVINA FFSTIVEIFL YCVALNQAKG KLVEGSMIGS ILGAVLLLPG 600
  601 LSMCGGAFKR KTQRYNPRSA GVSSTMLSYA MVVMFAPSIF YQMYGSYEMK CKDCTSPGVC 660
  661 GRCRFIQPTF VLDSLYSTVI KPFSLIVTVA LFAAYVCGLF FTLRTHASLI WATTSHEPKR 720
  721 DDYFRSNSVV SMSTPTQTPK PTTPLPAKPE EDQGGGHDAP NWSRSKSTII LLGATILYAI 780
  781 IAEILVDNVD SILADFPINP KFLGLTVFAL VPNTTEFLNA ISFAVGGNVA LSLEIGSAYA 840
  841 LQVVLIQIPC LVLYSIYQNF ENVEQTFTLI FPSWDIIATL ISIYLFTYIY AEGKSNYFKG 900
  901 VILILIYVVV LSGFWFNDII DSI