YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7643
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVFRRPVYQ LFTRGFAYSR IIRNEAKVPK FSPVELEAAR LAREAGLGWL KHFPRKVIPY  60
   61 LELMRLEKPV GTWLLLLPCY WGITMASYSI AAPLWVTTKA IALFSVGALV MRGAGCTIND 120
  121 IWDRNLDNQV ARTMERPITS GRVSVPQAVA WLGVQCFAGL AVLLSLPFEC FYLGALSLPF 180
  181 VAAYPLFKRF TYYPQAMLSI CFSWGCLLGF PAVGAPLNLW VAVPLFISNW IWCLTYDTIY 240
  241 AHQDKKFDIK AGIKSTALAW GDKTKPIMKG LTVAQAGFYG FAGFMNSMGP GFYIAGAYAI 300
  301 ARLYNQILKV DLDNPKSCWS AFTSNIGTGF IFWYGIVFDY ILLLLGYI

Type	Start	End	Confidence
Cytoplasmic	1	69	0.99
Transmembrane Helix	70	92	0.89
Non-Cytoplasmic	93	99	0.76
Transmembrane Helix	100	122	0.86
Cytoplasmic	123	142	0.89
Transmembrane Helix	143	164	0.89
Non-Cytoplasmic	165	169	0.73
Transmembrane Helix	170	187	0.90
Cytoplasmic	188	199	0.69
Transmembrane Helix	200	222	0.89
Non-Cytoplasmic	223	277	0.86
Transmembrane Helix	278	301	0.84
Cytoplasmic	302	317	0.82
Transmembrane Helix	318	342	0.80
Non-Cytoplasmic	343	348	0.77