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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.13007, orf...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARCNNFFFF PIKINFKDHR FYICICIYIL MIIPSLKLTT TRSSFVSVSK YYSRMSNQFT  60
   61 ILSDDKTIEK PLLDDRSYRF IKLNNNGLRV LLINDPTTDK AAASLDVNVG SFTDKEYNIS 120
  121 GLAHFCEHLL FMGTEKYPKE NEYSNYLSKH SGSSNAYTAA EHTNYYFQVG ADYLEGALDR 180
  181 FSQFFIAPLF SKSCQDREIN AVDSENKKNL QSDMWRLYQL DKFTSNSAHP YSGFSTGNYQ 240
  241 TLHTDPVAKG VDVRDILIDF HKQHYSSNLM SLVILGKEDL NTLTNWAIEK FSAVPNKDLS 300
  301 RPNYNGELVY KPQQLGKLIK AKPIMDNHKM ELNFLIPDDL EDKWDTKPNG YFSHLVGHES 360
  361 KGSIIYYLKQ KGWATDLSAG AMTVCQGTSN FYIEFQLTPK GFENWQEIIV ITFQYLNFIT 420
  421 NDEPQKWIWD EIEEMSQVNF KFKQKMEASK TVSTLSNKLY KFDEYIPASY LLSSAIVRKF 480
  481 DPEAIKRFGS YFTPENLRIT LASQLLTGLN KQEKWYGTEY EYDDIPQELI HQIKSQPYDN 540
  541 NQNLHYPRPN HFIPTNFDVT KPKSKHPQVA PYLIEHNNKI NVWYKQDDTF EVPKGSIEVA 600
  601 FHLPSSNTDI NTSVMSNLAI EMLDDELNEL TYFAELVGLK VKLHAWRDGF LINVSGYSHK 660
  661 LSNLLQEVLN NFFQFKPKQD RFESIKFKLL KNFKNFGFQV PFQQVGVYHL QLLNDKLYQQ 720
  721 DDKIEALEKV TYEDVYQHFT QNIWQSGIFA EVLIHGNFDF AQSKQIRDII NESMENVKPW 780
  781 MEKYNEEQFH LQSYVLQPNE TIRYEVPLKD TANINSCIEY YIQINTNTDN LKLRVLTDLF 840
  841 ATIIREPCFD QLRTKEQLGY VVFSGTVLGR TTLGFRVLIQ SERTCDYLQY RIEEFLVQFG 900
  901 NYINNELSTE DFIKFKHALK NIKLTKLKHL NEETVRIWSN IIDGYYDFDS RTRQVEILEN 960
  961 ITKDELVEFF NTFIAKSDNT GKLITYLKSQ NPIEFTESKK LHSGIINYLY RNQIEINHEL1020
 1021 IDNLVKQYDE HKDLAVIAKE LSHDINVNKD KLLKVLNKSI AQPVPEIYPT VKLVVNDKEF1080
 1081 RKNRQLSGTP KPVNPLSKFL YNDQSHL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle