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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.5557, orf1...
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVKSITSA KSSNKLIKVI LFTLVFINLI YFTSVIHNNN KERISSITSK LTSSTSGNNN  60
   61 KQQEQHLSDV DNDKLSSSSN QQQQDAHETV LEEQEKEQQT QQQQSLSDDD IQFKKLVDAK 120
  121 LNSVKKNQGK YYMTNTDLSE TKIKVPIKQF LKKYESAESW INKNELYYDP RFTLSIYLNE 180
  181 LYMQYQEMSD EQLIDGNDNQ HLIGGKINSN ELPDISLPFN WVDWIDLTML NKEFSKPMYQ 240
  241 RLKCQDIQAN SHSNPDTSYF CTDNEDISEE TFQEFFKMGY KYKTQFPGFI INDHERHEHY 300
  301 CDNDYRVMQA KAYTMTHLLN PLKVIILGAD KKDGNGGTFE FSVDNSKTRL TSSKLIDRYM 360
  361 ESHGYYTRKQ DSNIDTVRNG KRFFFDSSED QNEVPDIIEM DYLSTWNQLN EKVVPKYLSP 420
  421 NETGYTNFLH MRDKNSIVLK ESKFMEPPSI ASQIEQYTGK PENELSPQEK LYLEGLQECS 480
  481 KYTDENEVRY FRMAVINPGD PRNRENEWGW HYDWRFFNGA LNYEKPDWNQ QELTHRTNII 540
  541 LDRLLRNWSK FAMEKGIITW IMHGPLLSWY WNGLLFPYDN DIDIQMPIDE LVNLAKNYNQ 600
  601 TLIVENPSEG YGKYLIEVNT YFHNRGISAE QNHIDARFHD VDSGIYIDIT ALSSSNAEVP 660
  661 KEYKQEKTIQ LIDDLTKTNS NKEGAGNNGK QVNSENQLIF NDRRKHFYKI DQISPLKFSM 720
  721 MQGIPVMVPN GITNRLQFEY SKGLKSLEFD NWFYIKQLNL WVQKDNIIPI LEDQTRTSNE 780
  781 DILKQIQPPS SLSNDQILKL LNNEEILQEY YLTRSLTRFH DFEKQVLFDD NGNDKPLDLV 840
  841 KYKTYKKGLK MVKPLRKALY EYENIERIKH HH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle