YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRP45_CANAL
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASCNLLVIQ TTSIIMFSSL LSRPVNSSYD PSYHFSPVTR EIKNDPTSNG VVSTTKNATP  60
   61 LAPSKYDTTI PLKKRYPNLV HNFPKPELDE NVILETKKII DSILNPSDEP TNDINYIKYE 120
  121 NPNPNPNPNP NPNQEQQQQS SSSSSKIIQI KQFQEDPMLP PKFKLRKNRH ERIIEDVTFV 180
  181 KDLKTKKLTK EDREFWNIPA AVSNWKNSQG FTIGLDKRMI GREHVPIEMN IEKFNDLSTA 240
  241 LSDADLQARE DLKQRNEIRQ QKQLQEKRLR DEKIKEIANR SKRRRY

Type	Start	End	Confidence
Signal Peptide	1	27	0.83
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	286	0.99