YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5535
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.85
Transmembrane Helix	29	48	0.47
Non-Cytoplasmic	49	72	0.44
Transmembrane Helix	73	95	0.70
Cytoplasmic	96	101	0.52
Transmembrane Helix	102	122	0.90
Non-Cytoplasmic	123	129	0.49
Transmembrane Helix	130	153	0.76
Cytoplasmic	154	161	0.54
Transmembrane Helix	162	184	0.89
Non-Cytoplasmic	185	195	0.59
Transmembrane Helix	196	218	0.90
Cytoplasmic	219	265	0.60
Transmembrane Helix	266	286	0.60
Non-Cytoplasmic	287	308	0.80
Transmembrane Helix	309	329	0.92
Cytoplasmic	330	335	0.80
Transmembrane Helix	336	355	0.95
Non-Cytoplasmic	356	363	0.77
Transmembrane Helix	364	387	0.85
Cytoplasmic	388	395	0.79
Transmembrane Helix	396	417	0.88
Non-Cytoplasmic	418	428	0.77
Transmembrane Helix	429	450	0.91
Cytoplasmic	451	485	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKALQPLRT LRRIVWGQPP DNPVARSYLF KLDAFVLSYV CLLYWANYLD RANLANAYVS  60
   61 GMQEDLQMKG NELNIINTCF YVGYIVAMVP HNLILLKVRP RYWISICGFC WAVLTLSMYK 120
  121 VHSFKQLCVI RFFEAMFKAV TFAGTHLILG TYYDEELLPM RTAVFTSSGL LGSLFSGVLQ 180
  181 AAIYKSMEDY NGIRGWRWLF IIDFLITIPI VIFGFFCFPD EPQISKPFYM TNEEHQLALE 240
  241 KKLSSKDKAN SDWNWVSICN RVFRNWHWYL FSFLWVLGGE NESFVTNSLM PLWLKYYNYG 300
  301 VEQRNHYPMG QYAVGVVATI ISALYIHAFG KGRHHWHMGI IIGIFTTIAA AVFAAKPNNT 360
  361 VAVFVSQYLS AVSFAGQTVF FSWANIVCIN DLQERAIVLA SMNMFSNAVN AWWSILFYGA 420
  421 DTAPEFKKGC WALLATAIAN IGVVVVIQVL QAKDKHQSHN DDGGVVAVVM DGESDEVESG 480
  481 GPIKV