YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5534
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLPTSSDR EYRYNYNQDS SFSTLRNVLT TKLAAVSDII QQARTWYLEQ STIKQILLGG  60
   61 ALVVIGVISV LMVIFHIHII RFLIYLSDEW HNLKYGSLII FALVFMVGFP PLIGFSALSF 120
  121 LTGMIYGCPQ GWPLIASASV LGSTCSFIVY RYVLHNQAVK LMNHNDTFRA FAEILGEGNS 180
  181 LFLLILIRLC PLPYSLSNGA LAAIPELPLL TYFLATLITS PKILIHLFVG SKLKQIGDDK 240
  241 SSGGTKIVDI ISIVITGTAA TLAAYLIYAK MQQKLASYHS RGIAADDIMV FGNFEDDLEL 300
  301 GSNEIELNSA DFDADNFIIE DDDNEDDPRQ QGNTNNAKKD IGVSTSEEIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	55	0.65
Transmembrane Helix	56	80	0.90
Cytoplasmic	81	94	0.63
Transmembrane Helix	95	121	0.82
Non-Cytoplasmic	122	131	0.59
Transmembrane Helix	132	154	0.91
Cytoplasmic	155	169	0.66
Transmembrane Helix	170	192	0.72
Non-Cytoplasmic	193	208	0.51
Transmembrane Helix	209	230	0.81
Cytoplasmic	231	246	0.62
Transmembrane Helix	247	269	0.88
Non-Cytoplasmic	270	350	0.62