YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68473533, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVYYKKLD KLQFQIYDLF SSLLQLSEAE DESVYKASFD DTVQEIDSLL IAFKDLLRLL  60
   61 RPKDKSNKFD TYELKFHSLK HKLRELQVFI NDQQQDKLHE YRIKHFHLQD SPVDTINNEF 120
  121 ARDQLFADRS TKKTKKEMEA SINQQIVSQN KQITKSLQAS RQLLSAGILQ SELNIDNIDQ 180
  181 QTKDLYKLNE GFIQFNDLLN RSKKIVKFIE KQDKADRQRI YLSMGFFILC CSWVVYRRIL 240
  241 RRPLKIFLWS FFKIFNIFNW LLGGGRSKGL SASDMIVSSV IAATTEIVDY EATKTLLDTL 300
  301 SNAVDSNTAI DTLAMVVESL TTSSMEHIVD EL

Type	Start	End	Confidence
Non-Cytoplasmic	1	219	0.60
Transmembrane Helix	220	240	0.80
Cytoplasmic	241	245	0.53
Transmembrane Helix	246	264	0.58
Non-Cytoplasmic	265	332	0.47