YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13519, orf...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKKKFFAC NFFFLCCSTL MIRLYPGIRP LRTGVVHFST KQAIRSSLWT IPNVLTYTRI  60
   61 ITTPFIGYYI TTGQSTAALS LFTYSCVTDF VDGYIARKYN MKSIVGSIVD PLADKLLMTV 120
  121 CTVSLGYVHA IPPVIASIII GRDVMLSFMS FYYRYKSLPA PKTFDKFISI GQIPTISVHP 180
  181 NMLGKINTAL QMVYIGSLVY RPLVESVVSG AVYDGLGLVV GATTLASGAN YLFSKSSWRY 240
  241 VK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	27	0.85
Non-Cytoplasmic	28	74	0.83
Transmembrane Helix	75	95	0.53
Cytoplasmic	96	115	0.64
Transmembrane Helix	116	141	0.64
Non-Cytoplasmic	142	210	0.63
Transmembrane Helix	211	233	0.81
Cytoplasmic	234	242	0.80