YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6082, orf1...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTEKTTET DSEVGYLDIY LRFNDDMEKD YCFQVKTTTV FKDLYKVFRT LPISLRPSVF  60
   61 YHAQPIGFKK SVSPGYLTQD GNFIFDEDSQ KQAVPVNDND LINETVWPGQ LILPVWQFND 120
  121 FGFYSFLAFL ACWLYTDLPD FISPTPGICL TNQMTKLMAW VLVQFGKDRF AETLLADLYD 180
  181 TVGVGAQCVF FGFHIIKCLF IFGFLYTGVF NPMRVFRLTP RSVKLDVTKE ELVKLGWTGT 240
  241 RKATIDEYKE YYREFKINQH GGMIQAHRAG LFNTLRNLGV QLESGEGYNT PLTEENKLRT 300
  301 MRQIVEDAKK PDFKLKLSYE YFAELGYVFA TNAENKEGSE LAQLIKQYRR YGLLVSDQRI 360
  361 KTVVRARKGE TDEEKPKVEE VVEE

Type	Start	End	Confidence
Cytoplasmic	1	115	0.87
Transmembrane Helix	116	136	0.74
Non-Cytoplasmic	137	189	0.87
Transmembrane Helix	190	210	0.83
Cytoplasmic	211	384	0.83