YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PNS1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.98
Transmembrane Helix	66	87	0.93
Non-Cytoplasmic	88	110	0.91
Transmembrane Helix	111	132	0.94
Cytoplasmic	133	138	0.88
Transmembrane Helix	139	160	0.92
Non-Cytoplasmic	161	164	0.85
Transmembrane Helix	165	184	0.93
Cytoplasmic	185	209	0.76
Transmembrane Helix	210	233	0.87
Non-Cytoplasmic	234	261	0.65
Transmembrane Helix	262	296	0.69
Cytoplasmic	297	313	0.56
Transmembrane Helix	314	335	0.92
Non-Cytoplasmic	336	349	0.51
Transmembrane Helix	350	372	0.84
Cytoplasmic	373	417	0.54
Transmembrane Helix	418	438	0.91
Non-Cytoplasmic	439	447	0.52
Transmembrane Helix	448	469	0.84
Cytoplasmic	470	518	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYPPPNYP PPNHPQYQQQ QDETYHVRPD MERQQDFGYY EKPTPSQNFD DSFKVEKPKF  60
   61 NDWPFAIFFW LVVAGFIAVA GITLNALRST YGFQGGSIYG SGNTFTLNTN TIILFAFIIV 120
  121 MAFILSAAII VFARLAPKAF IVTGVILNVV LGIGTAIFYF VEKYYSAAIV FLIFALFGAW 180
  181 CYWSSRHRIP LSATILTIVI DVMKMYPSTL IASFIGLIFS AAFSALFSIV IVATYVKYDP 240
  241 NSNNEACSVG GGSCSKGKLI GVLVFVFFAG YYISEVIRNV IHVVIAGIYG TWYYLANSDQ 300
  301 GAPKHPALSS LKRALTYCFG SITFGSLIVS LIQLLRQFIS ILRSNFAADG NGWGVCGMII 360
  361 LDFFVGFIDW LVRYLNKYAY CYVALYGKSY IKSAKDTFDL IRFKGMDALI NDMFINTALN 420
  421 LYSLFVAYLV ALLAYLYLKF TKPEYNSGGA FYAPVIAFAF LIAGQINRIS LTVIESGTAT 480
  481 FFVALAKDPE IFQMTNRNRF DDIFRNYPQV LEKITSDH