YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13494, orf...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYKSSGATS KLSQVEIIPA KTDVGALANR INLETRSLHD RADKTVTLKF ALALRNYKVY  60
   61 RQGLQAFYHV FASIEKALYR QLEKKDEWSE MLEQVWKPEI ARAGKAEQDL LFFYDDNKEK 120
  121 FIKPIMPAQI EFCKHILEVT EEKPYLLFAY LHVMYLALFA GGRIMRSSVL KATGMYPQRD 180
  181 GLSHDDVVRM GTNFFTFDVP DEDLLRLTYK RDYELVTRNG LTEEQKLEII EESKYIFEHD 240
  241 VKCVAELEKH NMDKLSGTWT YFLVTRGYYA ALVLFSLLAL IYLRRVVNKL T

Type	Start	End	Confidence
Cytoplasmic	1	145	0.62
Transmembrane Helix	146	165	0.64
Non-Cytoplasmic	166	264	0.77
Transmembrane Helix	265	286	0.84
Cytoplasmic	287	291	0.71