YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238879458
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKWVQSGLS AVAGTAEPEY GPDAIQPITK RIFDTNNGKI YRATEPKDFE WLSPNYTNVE  60
   61 TQTFYFTDLS NGNIGFAQII HSNVMGLTTT AQFTFRLYNV KDKSINLWTS TKLEDFEIKD 120
  121 SNFYAKDLSL ELKDNKVYKL KSSVNKESIV EFEMERLTDG VIFGDDGMSF YGEDPEQPWG 180
  181 SMRHVFWPRC KVNGTITTAD NKVIEINNGL TMFVMALQGM KPHHAAKSWN FMNFQSANHS 240
  241 AVQMEFTTPK SYGTTKVNIG IVTDNEKILI ASIDNQVVHS DTKFDDVGGW DVPQKIEFNY 300
  301 IDGKDKDKQV ASVSGNLSQL VERVDVMAEI PQFVKNIVSG VAGARPYIYQ YANEFTIDIN 360
  361 NGDGEKVKED GVGFTEVTFI SD

Type	Start	End	Confidence
Signal Peptide	1	18	0.73
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	382	0.99