YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13460, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSIQNRTI EFQQCVSTYD KINKKHNKHV NNSPALSTPK KSYFSQQAGL IAKDISHVTE  60
   61 LLSKLAVLAK RKPIFDDKPI EIGELTYVIK QDIFKIETNI QNLQKYLKGD TSVSIDAQTT 120
  121 QFSKNVLTLL NSKMKNVSGE FKNVLEIRQK NEIINKNRTE NFLSSVSASR SSNNQSPLVD 180
  181 NPNASLSNLS ENPFLASSPP ENLPYDPDAD PDTSSPYGVS NNGEYLSLPS QTQQMLLMEE 240
  241 QQYGNQQYLQ QRNRAVESIE STINEVGNLF QQLATMVSEQ GEQIQRIDAN VEDINMNITG 300
  301 AQRELLKYYA HITSNRWLFL KIFGVLIVFF FLWVLVS

Type	Start	End	Confidence
Cytoplasmic	1	316	0.85
Transmembrane Helix	317	336	0.95
Non-Cytoplasmic	337	337	0.85