YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ROT1_CANAL
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFSRYFIPI ILTLLTSSPL FVDADPNMEE LEGTWSSKSN TVFTGPGFYD PVEELLIEPD  60
   61 LPGICYSFTK DGHYEEALYR VKPNPKNHSC AVASVTYQHG KYELLSNGSL VLTPIAVDGR 120
  121 QLLSDPCNSE DPSKSTYTRY VQSTWFKTYQ VYVDSYHGRW TLQIYQFDGS KMQPLYLAYK 180
  181 PPVMLPTIAL NPTDEASETA STLGSVSHKI KRSRMRIKRS LENQYRTNAK REIYTEKFDK 240
  241 IWWSSVFCLA LASSYFFLKR

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	260	0.95