YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13642, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.96
Transmembrane Helix	61	82	0.87
Non-Cytoplasmic	83	97	0.80
Transmembrane Helix	98	117	0.93
Cytoplasmic	118	125	0.71
Transmembrane Helix	126	145	0.94
Non-Cytoplasmic	146	152	0.82
Transmembrane Helix	153	176	0.92
Cytoplasmic	177	186	0.83
Transmembrane Helix	187	206	0.95
Non-Cytoplasmic	207	215	0.73
Transmembrane Helix	216	237	0.93
Cytoplasmic	238	276	0.96
Transmembrane Helix	277	299	0.88
Non-Cytoplasmic	300	309	0.75
Transmembrane Helix	310	329	0.90
Cytoplasmic	330	337	0.79
Transmembrane Helix	338	359	0.92
Non-Cytoplasmic	360	365	0.82
Transmembrane Helix	366	389	0.90
Cytoplasmic	390	401	0.84
Transmembrane Helix	402	424	0.93
Non-Cytoplasmic	425	432	0.89
Transmembrane Helix	433	456	0.91
Cytoplasmic	457	465	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTSVNTEF EPCSITINGI AMETLSTPQE SISIDSDPQS DNDNDVQEVK YPEGGLRAYS  60
   61 VVFGSFIGLM ATFGTLNSVG AIQAYIATHQ LSDVKTSTIS WIFSIYTAIS FANCMVVGPL 120
  121 FDVKGAMLPM VVGTVMISGG FMAVANCDTV PQFILALAIC VGLGNSLNIT PLIGVLSHWF 180
  181 NLKRGRAIGM ATIGGSVGGI IVPLMLRSLY TNVGFVWAIR ILGFFCLACN GIAILLCRSR 240
  241 ICQESDTVTP KNSLWTNLVQ IKDQFEFSAL LDPKYSFCIV GTFFTEISLL SMLTYLATYA 300
  301 IAQGMSESQS YVLLTVFNTT GVLGRLVPGI LSDKFGHFNI MIAMLIGFTL SMLILWLPFG 360
  361 SNIGALYAFA AISGFFSSSI LSLTPVCLGS ITPVQKFGQR YGLLYFFVSL GNLFGIPVSA 420
  421 AIIGNGSKHS YDMFAVYCCV FGVVGTCCWF ISRFYIVGLK LNVRV